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    5 repositories

    • phageannotator

      Public
      Nextflow
      •
      MIT License
      •1•0•1•0•Updated Aug 21, 2024Aug 21, 2024

    • SaIsolates

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • bactopia

      Public
      A flexible pipeline for complete analysis of bacterial genomes
      Nextflow
      •
      MIT License
      •80•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • biobakerymgx

      Public
      Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools
      Nextflow
      •
      MIT License
      •7•1•15•1•Updated Apr 29, 2024Apr 29, 2024

    • caganalyzer

      Public
      A pipeline for identifying and analyzing co-abundant gene clusters (CAGs) in microbiome studies
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Apr 9, 2024Apr 9, 2024
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