Implementation of CellPLM - #19

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HelloWorldLTY wants to merge 17 commits into

openproblems-bio:mainfrom

HelloWorldLTY:main

Commits on Dec 8, 2024

update cellplm and scfoundation
HelloWorldLTY
committed
5170369

Commits on Dec 14, 2024

update cellplm
HelloWorldLTY
committed
6156a77

Commits on Dec 17, 2024

update cellplm and scf
HelloWorldLTY
committed
f479b85

Commits on Dec 19, 2024

only cellplm
HelloWorldLTY
committed
62bbea8

Commits on Dec 26, 2024

update cellplm all
HelloWorldLTY
committed
85a21a2
update doi
HelloWorldLTY
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ff325ac

Commits on Jan 7, 2025

update all:
HelloWorldLTY
committed
c3c03a6

Commits on Jan 8, 2025

update correct label
HelloWorldLTY
committed
6a98ccb

Commits on Jan 10, 2025

Remove scgpt from cellplm config
lazappi
committed
28f3ce0
Add model_name argument to cellplm
lazappi
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f35db1d
Warn if GPU is not available for cellplm
lazappi
committed
b96e12c
Fix model temp dir cleanup
lazappi
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e6a15cd
Add cellplm to benchmark workflow
lazappi
committed
4454035
Tidy and style cellplm script
lazappi
committed
3951a7d

Commits on Jan 27, 2025

Merge remote-tracking branch 'origin/main' into HelloWorldLTY/main
lazappi
committed
5c6b249
Adjust cellplm to use counts
lazappi
committed
7b4f4a9
Add non-applicable exit code to CellPLM
lazappi
committed
938d673