fix: citation helm deployment

citation/README.md

@@ -9,7 +9,7 @@ reducing the amount of "paperwork" necessary to register datasets associated wit
 It provides a pre-publication data repository, a service to generate DOI metadata and publish it with DataCite, 
 and a landing page facility to support DOIs registered with DataCite through the service.
 
-Currently the service will:
+Currently, the service will:
 - create a draft DOI metadata document using the minimal information necessary
 - generate a VOSpace directory for the dataset to be housed and later archived when the DOI is minted
 - register the DOI with DataCite when the DOI is minted
@@ -113,3 +113,59 @@ A DOI managed through the CANFAR services has 2 states:
 - are publicly available
 - have been registered with DataCite.org
 - are findable through doi.org and other DOI search engines
+
+## Deployment
+
+The **citation** application is packaged as a WAR and can be deployed as a
+Docker container to Kubernetes using the provided Helm chart.
+
+### Building the Docker image
+
+The Dockerfile for the citation service is located at `citation/Dockerfile` and
+expects a built WAR at `citation/build/libs/citation.war`.
+
+From the repository root:
+
+1. Build the application WAR:
+
+   ```bash
+   ./gradlew :citation:clean :citation:build
+   ```
+
+2. Build the Docker image:
+
+   ```bash
+   docker build \
+     -t images.opencadc.org/canfar/citation:v1.0.0 \
+     -f citation/Dockerfile \
+     citation
+   ```
+
+Adjust the image name and tag as needed for your registry. The default Helm
+values expect the image to be available as `images.opencadc.org/canfar/citation`
+with a tag matching the chart `appVersion` (see `citation/helm/values.yaml`).
+
+### Deploying with Helm
+
+A Helm chart for deploying the citation service is provided in
+`citation/helm`. To install the chart into a Kubernetes cluster:
+
+```bash
+cd citation
+
+helm install citation ./helm \
+  --namespace citation \
+  --create-namespace \
+  --set image.repository=images.opencadc.org/canfar/citation \
+  --set image.tag=v1.0.0
+```
+
+Key notes:
+
+- Override `image.repository` and `image.tag` if your image is stored in a
+  different registry or uses a different tag.
+- Enable and configure `ingress` or `httpRoute` in `values.yaml` (or via
+  `--set`/`-f` overrides) to expose the service externally according to your
+  cluster's ingress or Gateway API setup.
+- Other operational parameters (replica count, resources, autoscaling, etc.)
+  can also be customized via `values.yaml`.

citation/helm/.helmignore

@@ -0,0 +1,23 @@
+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/

citation/helm/Chart.yaml

@@ -0,0 +1,24 @@
+apiVersion: v2
+name: citation
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.1.0
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: "1.16.0"

citation/helm/templates/NOTES.txt

@@ -0,0 +1,35 @@
+1. Get the application URL by running these commands:
+{{- if .Values.httpRoute.enabled }}
+{{- if .Values.httpRoute.hostnames }}
+    export APP_HOSTNAME={{ .Values.httpRoute.hostnames | first }}
+{{- else }}
+    export APP_HOSTNAME=$(kubectl get --namespace {{(first .Values.httpRoute.parentRefs).namespace | default .Release.Namespace }} gateway/{{ (first .Values.httpRoute.parentRefs).name }} -o jsonpath="{.spec.listeners[0].hostname}")
+  {{- end }}
+{{- if and .Values.httpRoute.rules (first .Values.httpRoute.rules).matches (first (first .Values.httpRoute.rules).matches).path.value }}
+    echo "Visit http://$APP_HOSTNAME{{ (first (first .Values.httpRoute.rules).matches).path.value }} to use your application"
+
+    NOTE: Your HTTPRoute depends on the listener configuration of your gateway and your HTTPRoute rules.
+    The rules can be set for path, method, header and query parameters.
+    You can check the gateway configuration with 'kubectl get --namespace {{(first .Values.httpRoute.parentRefs).namespace | default .Release.Namespace }} gateway/{{ (first .Values.httpRoute.parentRefs).name }} -o yaml'
+{{- end }}
+{{- else if .Values.ingress.enabled }}
+{{- range $host := .Values.ingress.hosts }}
+  {{- range .paths }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ $host.host }}{{ .path }}
+  {{- end }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "citation.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch its status by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "citation.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "citation.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "citation.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
+  echo "Visit http://127.0.0.1:8080 to use your application"
+  kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT
+{{- end }}

citation/helm/templates/_helpers.tpl

@@ -0,0 +1,62 @@
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "citation.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "citation.fullname" -}}
+{{- if .Values.fullnameOverride }}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- $name := default .Chart.Name .Values.nameOverride }}
+{{- if contains $name .Release.Name }}
+{{- .Release.Name | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
+{{- end }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "citation.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Common labels
+*/}}
+{{- define "citation.labels" -}}
+helm.sh/chart: {{ include "citation.chart" . }}
+{{ include "citation.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end }}
+
+{{/*
+Selector labels
+*/}}
+{{- define "citation.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "citation.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end }}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "citation.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create }}
+{{- default (include "citation.fullname" .) .Values.serviceAccount.name }}
+{{- else }}
+{{- default "default" .Values.serviceAccount.name }}
+{{- end }}
+{{- end }}

citation/helm/templates/deployment.yaml

@@ -0,0 +1,78 @@
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "citation.fullname" . }}
+  labels:
+    {{- include "citation.labels" . | nindent 4 }}
+spec:
+  {{- if not .Values.autoscaling.enabled }}
+  replicas: {{ .Values.replicaCount }}
+  {{- end }}
+  selector:
+    matchLabels:
+      {{- include "citation.selectorLabels" . | nindent 6 }}
+  template:
+    metadata:
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      labels:
+        {{- include "citation.labels" . | nindent 8 }}
+        {{- with .Values.podLabels }}
+        {{- toYaml . | nindent 8 }}
+        {{- end }}
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      serviceAccountName: {{ include "citation.serviceAccountName" . }}
+      {{- with .Values.podSecurityContext }}
+      securityContext:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      containers:
+        - name: {{ .Chart.Name }}
+          {{- with .Values.securityContext }}
+          securityContext:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          ports:
+            - name: http
+              containerPort: {{ .Values.service.port }}
+              protocol: TCP
+          {{- with .Values.livenessProbe }}
+          livenessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.readinessProbe }}
+          readinessProbe:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.resources }}
+          resources:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+          {{- with .Values.volumeMounts }}
+          volumeMounts:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      {{- with .Values.volumes }}
+      volumes:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.nodeSelector }}
+      nodeSelector:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}

citation/helm/templates/hpa.yaml

@@ -0,0 +1,32 @@
+{{- if .Values.autoscaling.enabled }}
+apiVersion: autoscaling/v2
+kind: HorizontalPodAutoscaler
+metadata:
+  name: {{ include "citation.fullname" . }}
+  labels:
+    {{- include "citation.labels" . | nindent 4 }}
+spec:
+  scaleTargetRef:
+    apiVersion: apps/v1
+    kind: Deployment
+    name: {{ include "citation.fullname" . }}
+  minReplicas: {{ .Values.autoscaling.minReplicas }}
+  maxReplicas: {{ .Values.autoscaling.maxReplicas }}
+  metrics:
+    {{- if .Values.autoscaling.targetCPUUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: cpu
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetCPUUtilizationPercentage }}
+    {{- end }}
+    {{- if .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: memory
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    {{- end }}
+{{- end }}

citation/helm/templates/httproute.yaml

@@ -0,0 +1,38 @@
+{{- if .Values.httpRoute.enabled -}}
+{{- $fullName := include "citation.fullname" . -}}
+{{- $svcPort := .Values.service.port -}}
+apiVersion: gateway.networking.k8s.io/v1
+kind: HTTPRoute
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "citation.labels" . | nindent 4 }}
+  {{- with .Values.httpRoute.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+spec:
+  parentRefs:
+    {{- with .Values.httpRoute.parentRefs }}
+      {{- toYaml . | nindent 4 }}
+    {{- end }}
+  {{- with .Values.httpRoute.hostnames }}
+  hostnames:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+  rules:
+    {{- range .Values.httpRoute.rules }}
+    {{- with .matches }}
+    - matches:
+      {{- toYaml . | nindent 8 }}
+    {{- end }}
+    {{- with .filters }}
+      filters:
+      {{- toYaml . | nindent 8 }}
+    {{- end }}
+      backendRefs:
+        - name: {{ $fullName }}
+          port: {{ $svcPort }}
+          weight: 1
+    {{- end }}
+{{- end }}