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Add HRA fallopian tube NTR template (58 new terms) #3715

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64 changes: 64 additions & 0 deletions bulk_ntr_workflow/source_data/fallopian_tube.csv
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tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-ampulla,basement membrane of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-infundibulum,basement membrane of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-intramural-segment,basement membrane of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_basement-membrane-of-fallopian-tube-isthmus,basement membrane of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-ampulla,fluid of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-fimbria,fluid of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-infundibulum,fluid of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-intramural-segment,fluid of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_fluid-of-fallopian-tube-isthmus,fluid of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-ampulla,inner muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-infundibulum,inner muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-intramural-segment,inner muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_inner-muscle-layer-of-fallopian-tube-isthmus,inner muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of fallopian tube,,,UBERON:0003889,fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-fallopian-tube-ampulla,lamina propria Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-fimbria,lamina propria of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-infundibulum,lamina propria of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-intramural-segment,lamina propria of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:16938110, PMID:25994820"
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lamina-propria-of-fallopian-tube-isthmus,lamina propria of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,"https://doi.org/10.1016/j.celrep.2021.108978, PMID:25994820, PMID:16938110"
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_lymphatic-of-mesosalpinx,lymphatic of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mesothelium-of-mesosalpinx,mesothelium of mesosalpinx,,,UBERON:0012331,mesosalpinx,https://doi.org/10.1016/B978-0-12-801238-3.64401-X
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-ampulla,middle muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-infundibulum,middle muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-intramural-segment,middle muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_middle-muscle-layer-of-fallopian-tube-isthmus,middle muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-ampulla,mucosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of Fallopian tube ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-fimbria,mucosa of fallopian tube fimbria,,,UBERON:8410010,fimbria of uterine tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-infundibulum,mucosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of Fallopian tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-intramural-segment,mucosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of Fallopian tube intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_mucosa-of-fallopian-tube-isthmus,mucosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of Fallopian tube isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-ampulla,nerve of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-fimbria,nerve of fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-infundibulum,nerve of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-intramural-segment,nerve of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-fallopian-tube-isthmus,nerve of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_nerve-of-mesosalpinx,nerve of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-ampulla,outer muscle layer of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-ampulla,muscle layer of oviduct ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-infundibulum,outer muscle layer of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-infundibulum,muscle layer of oviduct infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-intramural-segment,outer muscle layer of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-intramural-segment,muscle layer of oviduct intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_outer-muscle-layer-of-fallopian-tube-isthmus,outer muscle layer of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_muscle-layer-of-oviduct-isthmus,muscle layer of oviduct isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-ampulla,plica of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-infundibulum,plica of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-intramural-segment,plica of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_plica-of-fallopian-tube-isthmus,plica of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-ampulla,serosa of fallopian tube ampulla,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of Fallopian tube ampulla,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-infundibulum,serosa of fallopian tube infundibulum,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of Fallopian tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-intramural-segment,serosa of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of Fallopian tube intramural segment,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serosa-of-fallopian-tube-isthmus,serosa of fallopian tube isthmus,,,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of Fallopian tube isthmus,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,,,UBERON:0012331,mesosalpinx,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-ampulla,vasculature of Fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-fimbria,vasculature of Fallopian tube fimbria,,,UBERON:8410010,fimbria of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-infundibulum,vasculature of Fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-intramural-segment,vasculature of Fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-fallopian-tube-isthmus,vasculature of Fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_vasculature-of-mesosalpinx,vasculature of mesosalpinx,,,https://purl.org/ccf/ASCTB-TEMP_serous-membrane-lining-of-mesosalpinx,serous membrane lining of mesosalpinx,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-ampulla,wall of fallopian tube ampulla,,,UBERON:0012648,ampulla of fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-infundibulum,wall of fallopian tube infundibulum,,,UBERON:0003984,uterine tube infundibulum,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-intramural-segment,wall of fallopian tube intramural segment,,,https://purl.org/ccf/ASCTB-TEMP_intramural-segment-of-fallopian-tube,intramural segment of Fallopian tube,
fallopian-tube,https://purl.org/ccf/ASCTB-TEMP_wall-of-fallopian-tube-isthmus,wall of fallopian tube isthmus,,,UBERON:0016632,isthmus of fallopian tube,
2 changes: 2 additions & 0 deletions src/templates/hra-fallopian-tube-groups.template.tsv
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ID LABEL Definition def_xref genus location In_subset Date Contributor Present_in_taxon Wikipedia_image xref
ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| EC % EC BFO:0000050 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=|
6 changes: 6 additions & 0 deletions src/templates/hra-fallopian-tube-reports/candidates.tsv
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label as_iri uberon_id note
mucosa of fallopian tube infundibulum UBERON:0005049 confirmed_match (confidence: high)
muscle layer of oviduct infundibulum UBERON:0007182 confirmed_match (confidence: high)
serosa of fallopian tube infundibulum UBERON:0007181 confirmed_match (confidence: high)
inner muscle layer of fallopian tube infundibulum UBERON:0012368 possible_match (UBERON:0012368 'circular muscle layer of muscular coat' is the general term for inner circular muscle layers with synonyms 'inner muscularis' and 'inner muscularis layer'. Could serve as genus for this specific infundibulum circular layer.)
outer muscle layer of fallopian tube infundibulum UBERON:0012369 possible_match (UBERON:0012369 'longitudinal muscle layer of muscular coat' is the general term for outer longitudinal muscle layers with synonyms 'outer muscularis' and 'outer muscularis layer'. Could serve as genus for this specific infundibulum longitudinal layer.)
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