Skip to content

Binned quality option#98

Merged
dhoogest merged 18 commits into
masterfrom
binned-quality-option
Jun 9, 2026
Merged

Binned quality option#98
dhoogest merged 18 commits into
masterfrom
binned-quality-option

Conversation

@dhoogest

@dhoogest dhoogest commented Jun 3, 2026

Copy link
Copy Markdown
Collaborator

Adds conditional handling and tests for executing a binned quality score learnErrors as described here. To specify error bins, extend the dada2 params with a section containing:

  "learnErrors": {
    "binnedQs": [2, 9, 23, 38]
  },

A test fixture with data from i100 mock community is added in test/i100_takara.

/cc @crosenth @nhoffman

@dhoogest

dhoogest commented Jun 3, 2026

Copy link
Copy Markdown
Collaborator Author

Sorry - had to make another PR targeting master

@crosenth crosenth self-requested a review June 9, 2026 17:56
@dhoogest dhoogest merged commit 6dffa7d into master Jun 9, 2026
3 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants