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Allow Ensembl VEP to take plugins and custom files

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In nf-core/pacvar;

· chaochaowong opened on Jun 19, 2026

Update the HiPhase module

enhancementNew feature or requestNew feature or request

Status: Open.

#59 In nf-core/pacvar;

· chaochaowong opened on Jun 19, 2026

swapping the remaining modules to use topics

enhancementNew feature or requestNew feature or request

Status: Open.

#58 In nf-core/pacvar;

· chaochaowong opened on Jun 19, 2026

PBSV_CALL inserts NUL bytes (^@) in the middle of a record?

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#47 In nf-core/pacvar;

· MikeHala opened on Apr 6, 2026

Replace pipeline parameter skip_snp to skip_snv

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In nf-core/pacvar;

· chaochaowong opened on Mar 16, 2026

GATK needs a sequence dictionary to run

enhancementNew feature or requestNew feature or request

Status: Open.

#27 In nf-core/pacvar;

· jos4uke opened on Mar 1, 2025

ERROR nextflow.cli.Launcher

Status: Open.

#18 In nf-core/pacvar;

· quynhbui1907 opened on Feb 13, 2025

Expand on possible ref genome suffixes

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In nf-core/pacvar;

· mvheetve opened on Feb 12, 2025