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Update nextflow.config for improved intrinsic error rate estimation; improved false double codon mutant pre-filtering #62

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Update nextflow.config for improved intrinsic error rate estimation; improved false double codon mutant pre-filtering #62

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ab2209e
Update nextflow.config
MaximilianStammnitz Jul 24, 2026
4eddee4
Merge branch 'dev' into dev
MaximilianStammnitz Jul 25, 2026
a5e441f
Update error_correction_false_doubles.R
MaximilianStammnitz Jul 26, 2026
eb72821
Update error_correction_false_doubles.R
MaximilianStammnitz Aug 2, 2026
cddd0c2
Update error_correction_false_doubles.R
MaximilianStammnitz Aug 3, 2026
53bcb87
Update modules.config
MaximilianStammnitz Aug 5, 2026
3462b9a
Update process_variant_counts.R
MaximilianStammnitz Aug 5, 2026
f9ce63a
Update error_correction_false_doubles.R
MaximilianStammnitz Aug 5, 2026
84f681d
Update error_correction_false_doubles.R
MaximilianStammnitz Aug 6, 2026
c20eb34
Update process_variant_counts.R
MaximilianStammnitz Aug 6, 2026
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3 changes: 3 additions & 0 deletions conf/modules.config
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Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,9 @@ process {
// --- Reference-derived, merged into intermediate_files ---

withName: 'BWA_INDEX' {
cpus = 1
memory = 1.GB
time = 30.min
publishDir = [
path: "${params.outdir}/intermediate_files",
mode: 'copy',
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