Update fitness_calculation.R - #27
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(@mashehu looking at the webpage, we may need another build after this) |
fix usage of stops/synonymous mutations depending on availability
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@mashehu can you please approve + merge? thanks |
mashehu
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Feb 27, 2026
| # - wt_seq_input: Wild-type sequence (string or path to FASTA file). | ||
| # - start_stop_pos: Target sequence range format "start-stop". | ||
| # - mutagenesis_type: Strategy ('nnk', 'nns', 'max_diff_to_wt', 'custom'). | ||
| # - mutagenesis_type: Strategy ('nnk', 'nns', 'nnh', 'nnn', 'nnk_nns', 'nnk_nns_nnh', 'custom'). |
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is this reflected in nextlfow_schema.json? or not relevant?
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yep, that's already been accounted for – thanks for checking
mashehu
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Feb 27, 2026
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Bug fix; calculating mean/sd fitness across replicates