Stop advertising flagged_metadata.txt.zst as a remote input#1214
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ncov-ingest no longer produces or uploads the GISAID flagged_metadata.txt artifact (the flag_metadata rule was a manual-curation-era leftover, now superseded by build-time QC). Remove it from the advertised remote inputs so the docs don't point at a file we no longer publish. See nextstrain/ncov-ingest#539. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Summary
ncov-ingest is removing the GISAID
flag_metadatarule (a manual-curation-era leftover, now superseded by build-time QC), so it will no longer produce or uploadflagged_metadata.txt.zst. This drops it from the advertised remote inputs so the docs don't point at a file we no longer publish.Companion to nextstrain/ncov-ingest#539.
Test plan
flagged_metadata.txt.zstremoved from the "All available genomes and metadata" list; no other references in the repo.🤖 Generated with Claude Code