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phylogenetic: Support nextstrain run (alternative)#330

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joverlee521 wants to merge 4 commits into
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nextstrain-run-workflows
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phylogenetic: Support nextstrain run (alternative)#330
joverlee521 wants to merge 4 commits into
masterfrom
nextstrain-run-workflows

Use top-level `workflows` key in `nextstrain-pathogen.yaml`

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