11.0.0

These release notes are automatically extracted from the full changelog.

This release drops support for Python versions 3.8 and 3.9 and adds explicit (i.e. tested) support for 3.14.

Note that this Python version support only matters if you're installing Nextstrain CLI from PyPI or Bioconda (c.f.). It does not apply if you're installing Nextstrain CLI using the standalone installation method we recommend in the Nextstrain installation documentation. In that case, a supported Python version is always bundled with nextstrain.

Improvements

• nextstrain build now runs Snakemake with the --rerun-incomplete option, aligning with nextstrain run. (#515)

Bug fixes

• Updated code to support the latest version of wrapt, used to show --dry-run outputs. (#499)
• Updated the dependency list to explicitly include boto3, used for various commands. (#499)
• Suppress warning from cryptography about deprecated Python 3.8 support (#523)