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nebiolabs / EM-seq_variant_calling Public

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Deepvariant#4

Merged

bwlang merged 7 commits into

mainnebiolabs/EM-seq_variant_calling:mainfrom

deepvariantnebiolabs/EM-seq_variant_calling:deepvariantCopy head branch name to clipboard

Jul 17, 2026

Conversation Commits7 (7)Checks Files changed

Merged

Deepvariant#4
bwlang merged 7 commits into
mainfrom
deepvariant

Commits

Commits on Apr 9, 2026

add fgbio_clip_bam module to clip overlapping r1/r2
lnblum
committed

Commits on Apr 15, 2026

add deepvariant module with ability to customize checkpoint
lnblum
committed
so that singularity can see the checkpoint folder
lnblum
committed

Commits on Jul 17, 2026

add --exome flag for targeted calling
lnblum
committed
add custom models for deepvariant from zenodo
lnblum
committed
Fix CI: use Docker in test profile, update NXF_VER, fix trailing backslash in deepvariant script
Copilot
authored
Fix CI: update snapshot tasksCount from 19 to 20 for small dataset test
Copilot
authored

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