Compare-vcfs and cleanup - #301

Merged

joshfactorial merged 18 commits into

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Jun 8, 2026

Commits on May 19, 2026

Add neat compare-vcfs subcommand; bump to v4.5.0 (#297)

joshfactorial
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claude
committed
46dbd49

Commits on May 20, 2026

Cover compare-vcfs CLI, --plot, stale-bed, multi-FN gaps

joshfactorial
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claude
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6961af3
Detect chrom-naming mismatches in compare-vcfs; add --chrom-aliases

joshfactorial
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claude
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73cd132
Close outside_* semantic gap + fill pre-merge test gaps

joshfactorial
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claude
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bf5ab16
Merge pull request #299 from ncsa/compare-vcfs
joshfactorial
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8aeb765
Drop cleanup_splits and reuse_splits; bump to v4.5.1

joshfactorial
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claude
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4a80456
Drop cleanup_splits and reuse_splits; bump to v4.5.1

joshfactorial
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claude
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0a7247b
Merge pull request #300 from ncsa/audit-splits-options
joshfactorial
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765b5ec
Add 'Validating NEAT outputs' section to README

joshfactorial
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claude
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b82ba8f
Fix seven doc gaps found in audit; update header to v4.5

joshfactorial
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claude
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858bd50
Merge pull request #302 from ncsa/docs-validation-section
joshfactorial
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9e020d3
Implement binned quality scoring for Illumina instruments (#293)

joshfactorial
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claude
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1be27ed
docs: document --quality-preset and binned quality scoring in README

joshfactorial
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claude
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a46c227
Merge pull request #304 from ncsa/feature/binned-quality-scoring
joshfactorial
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b4cacb8
Updated notes in readme
joshfactorial
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3545f50
Merge remote-tracking branch 'origin/develop' into develop
joshfactorial
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7a92c43

Commits on Jun 8, 2026

Updating gitignore
joshfactorial
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90f41e4
Merge branch 'main' into develop
joshfactorial
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3769280