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- #296
#296
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May 19, 2026
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#296
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Vectorize map_local_trinuc_bias; index indels by position for O(1) overlap check
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Vectorize write_bam_record; bump to 4.4.4
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ChangeLog: v4.4.4 entry summarizing variant + BAM-encoding optimizations
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README cleanup pass: fix outdated config keys, version refs, examples
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Remove parallel_mode from the user-facing config; derive splitting from threads
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ChangeLog: note parallel_mode removal in v4.4.3 entry
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GC bias coverage-semantics fix; bump to v4.5.0
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Drop stale TODOs and orphaned shape-curve scaffolding
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Remove orphaned common_variants + high_mut_regions scaffolding (#295)
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Revert version to 4.4.4 (was 4.5.0)
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Merge branch 'main' into develop
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