Error improvements - #274

Merged

joshfactorial merged 7 commits into

error_improvements

May 3, 2026

Commits on May 3, 2026

Updating model, read names, and a few other details. Overall goal is to implement avg_seq_error in such a way that actually affects the output.
joshfactorial
committed
44a470e
Expanding error model somewhat
joshfactorial
committed
308cbd9
Updating some parameters in error models
joshfactorial
committed
a78be15
Fix off-by-one and index bug in get_sequencing_errors

joshfactorial
and
claude
committed
6998152
Update tests for new get_sequencing_errors and errors_per_read signatures

joshfactorial
and
claude
committed
973714f
Add tests for num_errors behaviour and fix fallback infinite-loop

joshfactorial
and
claude
committed
c742df4
Fix deletion blacklist, indel gate, and quality array dtype bugs

joshfactorial
and
claude
committed
bcbf78c