Fix genomic coordinate incorrectly used as array index in quality array update - #162
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In `read_simulator.utils`, `apply_mutations` passed the genomic coordinates instead of the relative location of the mutation in the simulated read to `update_quality_array`, causing wrong or no quality scores to be updated. This commit corrects it by passing the relative location.
joshfactorial
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Oct 2, 2025
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Please change the target to develop. Once we've retested develop, we'll pull changes into main.
joshfactorial
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Oct 2, 2025
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In
read_simulator.utils,apply_mutationspassed the genomic coordinates instead of the relative location of the mutation in the simulated read toupdate_quality_array, causing wrong or no quality scores to be updated. This commit corrects it by passing the relative location.