Skip to content

bench report stage in/out + load, and pixi workspace config#156

Merged
nclack merged 2 commits into
mainfrom
pixi-and-bench-report
Jun 13, 2026
Merged

bench report stage in/out + load, and pixi workspace config#156
nclack merged 2 commits into
mainfrom
pixi-and-bench-report

Conversation

@nclack

@nclack nclack commented Jun 12, 2026

Copy link
Copy Markdown
Owner

Small follow-up rolling up the remaining working-tree changes left out of #155.

Two independent changes, one commit each:

  • bench: per-stage in/out throughput + loadbench/report.py's stage table
    now reports GB/s_out and load% (stage ms_total / wall) alongside the
    existing GB/s_in, so each pipeline stage shows input and output throughput
    and its share of the wall — making it obvious which stage bounds a run.
  • chore: pixi workspace config[tool.pixi.*] workspace/environments in
    pyproject.toml, .pixi/* ignored in .gitignore, and pixi.lock merge
    attributes in .gitattributes.

@codecov

codecov Bot commented Jun 13, 2026

Copy link
Copy Markdown

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 57.73%. Comparing base (cca3b09) to head (c7595d8).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #156      +/-   ##
==========================================
- Coverage   57.78%   57.73%   -0.06%     
==========================================
  Files          64       64              
  Lines       10046    10055       +9     
  Branches     1748     1750       +2     
==========================================
  Hits         5805     5805              
- Misses       3494     3500       +6     
- Partials      747      750       +3     
Flag Coverage Δ
unittests 57.73% <ø> (-0.06%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.
see 5 files with indirect coverage changes

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@nclack nclack merged commit 96d6be8 into main Jun 13, 2026
6 checks passed
@nclack nclack deleted the pixi-and-bench-report branch June 13, 2026 15:40
github-actions Bot added a commit that referenced this pull request Jun 13, 2026
Small follow-up rolling up the remaining working-tree changes left out
of #155.

Two independent changes, one commit each:

- **bench: per-stage in/out throughput + load** — `bench/report.py`'s
stage table
now reports `GB/s_out` and `load%` (stage `ms_total` / wall) alongside
the
existing `GB/s_in`, so each pipeline stage shows input and output
throughput
and its share of the wall — making it obvious which stage bounds a run.
- **chore: pixi workspace config** — `[tool.pixi.*]`
workspace/environments in
`pyproject.toml`, `.pixi/*` ignored in `.gitignore`, and `pixi.lock`
merge
  attributes in `.gitattributes`.

---------

Co-authored-by: Nathan Clack <nclack@biohub.org> 96d6be8
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant