1. script to recenter particles on focused domain for cryoEM 3D refinement and classification

usage help:

python recenter_particle.py -h

2. script to strip uid and rename particle image files from cryosparc in batch

usage help:

python rename_file_in_batch.py -h

3. script to plot fsc from Relion fsc data

usage:

open the plot_fsc_relion.py and change the fsc filename、resolution、output_figure name

4. script to convert cryosparc cs format into relion star format

usage:

python csparc2relionstar_parser.py -h

5. script to convert relion particles.star (good classes) selected from 2D classification to crYOLO-compatible (.cbox or .box) format for model training and particle picking

usage:

python3 relion2d_to_cryolo.py -h

6. mapping particles output from cisTEM to its original input file and restore the lost parameter, such as _rlnMicrographName, _rlnCoordinateX, _rlnCoordinateY. The output particle star file can be used for downstream processing in RELION.

usage:

python3 cistem2relion_star.py -h

7. desymmetrize particle star file after particle Cn symmetry expansion and focused-3D classification. The output particle is C1 and can be used for homogenous or non-uniform refinement further.

usage:

python desymmetrize_star.py <input.star> <output.star>