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fit_models_path step failures silently produce partial collections in spike pipeline

bugSomething isn't workingSomething isn't working

Status: Open.

#240 In matsengrp/multidms;

· jaredgalloway opened on May 8, 2026

Add learnable FlexibleSigmoid global epistasis function

Status: Open.

#197 In matsengrp/multidms;

· jaredgalloway opened on Mar 27, 2026

Add condition-specific mutation names to get_mutations_df

Status: Open.

#192 In matsengrp/multidms;

· jaredgalloway opened on Mar 2, 2026

Remove deprecated phenotype_as_effect parameter from get_mutations_df and get_variants_df

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In matsengrp/multidms;

· jaredgalloway opened on Dec 3, 2025

Create v2.0 migration guide and update documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#177 In matsengrp/multidms;

· jaredgalloway opened on Nov 18, 2025

Update test suite for v2.0 and achieve >90% coverage

Status: Open.

#176 In matsengrp/multidms;

· jaredgalloway opened on Nov 18, 2025

How do we count "times seen" with non-identical encodings and parameter transformation?

Status: Open.

#162 In matsengrp/multidms;

· jaredgalloway opened on Jul 8, 2024

Docs inline code formatting

Status: Open.

#155 In matsengrp/multidms;

· wsdewitt opened on Apr 8, 2024

citation

Status: Open.

#99 In matsengrp/multidms;

· wsdewitt opened on Jul 19, 2023

A ridge penalty that doesn't bias toward WT

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In matsengrp/multidms;

· wsdewitt opened on Mar 2, 2023