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v0.1.1 #2

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Merged
martijnende merged 58 commits into from
Sep 9, 2025
Merged

v0.1.1 #2

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fe1e9d0
Added boilerplate structure
martijnende Jul 23, 2025
74a50f5
Forward model working, but problem JIT caching
martijnende Jul 23, 2025
8c821a1
Fixed JIT caching
martijnende Jul 23, 2025
d851b52
Implemented first unit tests
martijnende Jul 23, 2025
31a7896
Added Github actions workflow (untested)
martijnende Jul 23, 2025
ec67103
Removed flake from workflow
martijnende Jul 23, 2025
864726d
Fixed duplicate code actions
martijnende Jul 23, 2025
beded66
Added documentation logic
martijnende Jul 23, 2025
f140dcb
Created actions workflow for docs
martijnende Jul 23, 2025
919a479
Levenberg-Marquardt inversion working
martijnende Jul 23, 2025
e5cf71e
Implemented test for LM inversion
martijnende Jul 24, 2025
8f7b18c
Created a basic example notebook
martijnende Jul 24, 2025
98a75ab
Added basic SVI functionalities (not tested)
martijnende Jul 24, 2025
a124bb4
Generalised typedefs a bit
martijnende Jul 24, 2025
83ebf87
Updated docs actions now that repo is public
martijnende Jul 24, 2025
43d01bb
Changed workflow titles for badges
martijnende Jul 24, 2025
fb6b62c
Updated README to include status badges
martijnende Jul 24, 2025
765c1ba
Added forward_models docstrings
martijnende Jul 25, 2025
308d513
Updated documentation building workflow to fix sphinx-apidoc
martijnende Jul 25, 2025
667033e
Changed workflow logic for better reuse
martijnende Jul 25, 2025
3d74ff2
Fixed file naming github actions
martijnende Jul 25, 2025
a70e0eb
Probably going to remove the Particles typedef logic later
martijnende Jul 25, 2025
c951bf7
Started implementing SVI, but bugs around every corner
martijnende Jul 29, 2025
9ddcbbe
Basic SVI working, still working on interface
martijnende Jul 31, 2025
0e04b04
Implemented SVI user interface (plots etc.)
martijnende Jul 31, 2025
4f1f603
Fixed circular import
martijnende Jul 31, 2025
0274b5f
Added SVI to example notebook (with several minor fixes)
martijnende Jul 31, 2025
4fa0014
Clean-up of unused imports
martijnende Aug 1, 2025
b77693d
Added extended documentation structure
martijnende Aug 1, 2025
a9935d4
Populated the getting started page
martijnende Aug 1, 2025
6391c20
Included infrastructure for references
martijnende Aug 1, 2025
6ea77fd
Added forward models documentation page
martijnende Aug 5, 2025
124869d
Added inverse models, fixed referencing
martijnende Aug 6, 2025
142a4e4
Populated RSF and spring-block documentation pages
martijnende Aug 6, 2025
ea530fa
Documented max-likelihood and Bayesian inversion (partially)
martijnende Aug 6, 2025
da633e3
Added SVI to docs
martijnende Aug 7, 2025
eddf912
Finalised SVI docs
martijnende Aug 7, 2025
c38f2d7
Some typo corrections
martijnende Aug 7, 2025
4ab5640
Started populating rock friction docs
martijnende Aug 7, 2025
61f11e6
Prior to recasting state evolution formalism
martijnende Aug 12, 2025
ddad42c
Implemented base Variables class and tested differentiability
martijnende Aug 18, 2025
37a97a9
A few small fixes before adjusting solver wrappers
martijnende Aug 18, 2025
c4cf8f9
New Variables class working with SciPy solve_ivp
martijnende Aug 18, 2025
c0b98b6
Inertial spring-block working, but equations are extremely stiff...
martijnende Aug 18, 2025
5c4ea8c
Changed automatic state variable discovery to user-defined assignment
martijnende Aug 20, 2025
c9dcdba
Made unit tests compatible with new data structure
martijnende Aug 21, 2025
642fe24
Finally got LM inversion test working...
martijnende Aug 25, 2025
b250f8d
Modified example to match new data structure. LM unstable
martijnende Aug 25, 2025
a9f68de
Managed to make SVI work, but converges to the wrong results!
martijnende Aug 26, 2025
4b50462
SVI and everything finally working again...
martijnende Aug 26, 2025
24c4486
Updated documentation to account for new data structure
martijnende Aug 28, 2025
b9de1f8
Figured out how to use autosummary/autodoc
martijnende Aug 28, 2025
411b219
Docstrings forward models
martijnende Aug 28, 2025
136c3e6
Added many more docstrings
martijnende Aug 29, 2025
1f76806
Docstrings of containers
martijnende Aug 29, 2025
366970b
Forgot to include .py in commit...
martijnende Aug 29, 2025
a4f0e0e
Changed JAX requirements to allow build
martijnende Sep 9, 2025
cf17e01
Merge branch 'bug/flatten' into dev
martijnende Sep 9, 2025
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4 changes: 2 additions & 2 deletions pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ authors = [
{ name = "Martijn van den Ende", email = "martijnende@gmail.com" },
]
dependencies = [
"jax==0.7.0",
"jax<=0.7.0",
"jax_tqdm",
"jaxtyping",
"equinox",
Expand All @@ -22,7 +22,7 @@ dependencies = [

[project.optional-dependencies]
dev = ["black", "isort", "twine"]
gpu = ["jax[cuda12]==0.7.0"]
gpu = ["jax[cuda12]<=0.7.0"]
docs = [
"make",
"myst-nb",
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