This repo is meant to reproduce the UMAP in Python using the data from https://doi.org/10.1126/science.abf3041.
.SRA and .fastq files are available in the public University of Tartu HPC folder (path: /gpfs/space/projects/genomic_references/OneK1K/).
Please find the RNA count matrix script in the scripts folder. All of the filtering/clustering is done in thenotebooks folder. The specific versions of the Python libraries are provided in requirements.txt.
marilin99/sc_quality_analysis
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