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  • Köln, Deutschland

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mankiddyman/README.md

Aaryan Bhatia

PhD student · Evolutionary Genomics · Max Planck Institute for Plant Breeding Research, Cologne

Comparative genomics of holocentric plants (Drosera spp.) — de novo genome assembly, transcriptomics, annotation, and comparative analysis. Building reproducible, metadata-driven pipelines in Snakemake.

reproducible_phd

CO_smk

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📊 Data Visualisation Projects

Bioinformatician Salaries in Germany (2019–2026)

Scraped annually from gehaltsvergleich.com + Wayback Machine · Auto-updated every April via GitHub Actions

salary figure

Choropleth map of average gross monthly salary by federal state (2026), salary distribution (Q1/mean/Q3) per state, and year-on-year trends 2019–2026. East/West split highlighted. Source: gehaltsvergleich.com.

🔬 Research

  • Comparative genomics — Drosera (carnivorous plants), Snakemake pipelines, HiFi assembly
  • Transcriptomics & annotation — Helixer, OrthoFinder, gene space analysis
  • Tools: Python · R · Snakemake · bash · HPC (SLURM)

Why r is a biased ruler — Kosambi mapping function from first principles

One-page R Markdown notebook · Genetics history + math + simulation

mapping functions figure

Walks from Mendel and Sturtevant through Haldane's Poisson derivation to Kosambi's 1944 interference correction, with a four-panel figure showing how the bias arises and how mapping functions correct it. Ends with a brief tour of the modern gamma-renewal framework.

📬 Contact

Max Planck Institute for Plant Breeding Research · Cologne, Germany

Popular repositories Loading

  1. Computational-Neuroscience Computational-Neuroscience Public

    A collection of the code I ended up writing as I teach myself methods in computational neuroscience for my project with Dr Sadra Sadeh during my MSc in Bioinformatics and Theoretical systems biolog…

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  2. reproducible_phd reproducible_phd Public

    My entire PhD on comparative genomics of holocentric and monocentric Drosera plants. Each step in snakemake from beginning to end.

    Python 1

  3. SUP SUP Public

    this is my first repository

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    Python 3 version of the vertex model code in https://bitbucket.org/Pigueco/vertex_model_python_2.7/src/master/

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  5. IKNM_model IKNM_model Public

    Forked from Rebeca99/IKNM_model

    Python

  6. aaryan_modification aaryan_modification Public

    Forked from lambda-feedback/IsSimilar

    IsSimilar Evaluation Function

    Python