Scripts and pipelines used to analyze extant HTS data from the WOOF project. The steps envolve pre-processing, mapping, variant calling and population genomics analysis. Designed for the analysis of Illumina sequences obtained from Portuguese and North Africa specimens generated by the WOOF project and reference sequences retrieved from database.
Scripts and pipelines used to analyze modern and acient HTS data for the paper "A multidisciplinary study of Iberian Chalcolithic dogs" published in JAS:Reports. Access the paper at https://doi.org/10.1016/j.jasrep.2022.103338.