Code for processing and analyzing data described in the manuscript "Proteomic changes induced by longevity promoting interventions in mice" (2023).
1.) /00_Format_Data/lc_proteomics_m005_formatting.r
R code for formatting available peptide data for downstream analyses.
2.) /01_Protein_Rollup/lc_proteomics_m005_rollup.do
STATA code for rolling up measured peptide into protein level measurements.
3.) /02_Normalization/lc_proteomics_m005_normalize.do
STATA code for normalizing protein measurements.
4.) /03_Hurdle_Model/lc_proteomics_m005_hurdle_model.do
STATA code for hurdle and linear models to estimate effects of longevity on protein measurements.