Skip to content

Navigation Menu

Appearance settings

logsdon-lab

- AI CODE CREATION
  GitHub CopilotWrite better code with AI
  GitHub Copilot appDirect agents from issue to merge
  MCP Registry^NewIntegrate external tools
- DEVELOPER WORKFLOWS
  ActionsAutomate any workflow
  CodespacesInstant dev environments
  IssuesPlan and track work
  Code ReviewManage code changes
- APPLICATION SECURITY
  GitHub Advanced SecurityFind and fix vulnerabilities
  Code securitySecure your code as you build
  Secret protectionStop leaks before they start
- EXPLORE
  Why GitHub
  Documentation
  Blog
  Changelog
  Marketplace
View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Logsdon Lab

12 followers
United States of America
https://www.logsdonlab.com/

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

README.md

Logsdon Lab

Welcome to the Logsdon Lab!

Popular repositories Loading

CenMAP CenMAP Public

Centromere mapping and annotation pipeline

Python 27 2
NucFlag NucFlag Public

Misassembly Identifier

Python 18 1
CenPlot CenPlot Public

Centromere plotting library

Python 7 1
AssemblyRepairer AssemblyRepairer Public

Forked from gaoshenghanpenn/AssemblyRepairer

Python 4
CenStats CenStats Public

Centromere statistics toolkit

Python 3
Snakemake-ONT-Basecalling Snakemake-ONT-Basecalling Public

Snakemake workflow to basecall ONT reads with dorado.

Python 1

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C Perl Python Rust

Sort

Select order

Last updated Name Stars

Showing 10 of 33 repositories

ont-data-storage Public
Documentation and scripts for storing ONT promethION sequencing data on UPenn's LPC and AWS

logsdon-lab/ont-data-storage’s past year of commit activity

Python 0 0 0 0 Updated Jun 4, 2026
Snakemake-DiMeLo-seq-Viz Public
Workflow to visualize DiMeLo-seq 6mA enrichment

logsdon-lab/Snakemake-DiMeLo-seq-Viz’s past year of commit activity

Python 0 MIT 0 0 0 Updated Jun 4, 2026
CenMAP Public
Centromere mapping and annotation pipeline

logsdon-lab/CenMAP’s past year of commit activity

Python 27 MIT 2 3 1 Updated Jun 3, 2026
Snakemake-NucFlag Public
Workflow to map PacBio HiFi reads back to an assembly and check for misassemblies at specific regions via NucFlag.

logsdon-lab/Snakemake-NucFlag’s past year of commit activity

Python 0 1 0 0 Updated Jun 3, 2026
Snakemake-merqury Public
Workflow to run merqury

logsdon-lab/Snakemake-merqury’s past year of commit activity

Python 0 0 0 0 Updated Jun 3, 2026
NucFlag Public
Misassembly Identifier

logsdon-lab/NucFlag’s past year of commit activity

Python 18 MIT 1 0 0 Updated Jun 2, 2026
rs-nucflag Public
NucFlag library

logsdon-lab/rs-nucflag’s past year of commit activity

Rust 0 MIT 0 4 0 Updated Jun 1, 2026
lpc-resources Public
Resources for getting started on the LPC.

logsdon-lab/lpc-resources’s past year of commit activity

0 0 1 0 Updated May 29, 2026
Snakemake-Aligner Public
Workflow to map long reads back to an assembly.

logsdon-lab/Snakemake-Aligner’s past year of commit activity

Python 0 0 0 0 Updated May 27, 2026
Snakemake-AssemblyRepairer Public Forked from gaoshenghanpenn/Snakemake-AssemblyRepairer
Snakemake-AssemblyRepairer: A snakemake version AssemblyRepairer

logsdon-lab/Snakemake-AssemblyRepairer’s past year of commit activity

Python 0 1 0 0 Updated May 22, 2026

View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.