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4 followers · 6 following

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Achievement: Quickdraw

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Achievement: Quickdraw

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@Snitkin-Lab-Umich

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kylegontjes/README.md
  • 👋 Hi, I’m @kylegontjes
  • 👀 I’m interested in antibacterial resistance, genomic epidemiology, comparative genomics, phylogenetics, and evolution.
  • 🌱 I’m proficient in: R, linux, and SAS
  • 🌱 I'm learning: python
  • 📫 How to reach me: kgontjes@umich.edu
  • ✏️ A collection of useful code snippets: https://gist.github.com/kylegontjes

GitHub contributions

GitHub Streak

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  1. CoverageStats CoverageStats Public

    Calculate coverage statistics after mapping short-read sequenced isolates to a reference sequence

    Python

  2. GeneScreener GeneScreener Public

    Snakemake to quickly screen gene presence in genes

    Python

  3. ISScreener ISScreener Public

    Runs insertion sequence detection workflow on Illumina WGS data

    Python

  4. phyloAMR phyloAMR Public

    Toolkit to perform phylogenetically-informed analysis of antibiotic resistance and other genome-influenced traits

    R 6 1