anvio_meta

Anvi'o is an open-source analysis and visualization platform for microbial 'omics data and this is a snakemake-based Anvi'o metagenomic workflow, heavily based on sbx_anvio and sbx_coassembly by Louis J Taylor https://github.com/louiejtaylor.

Helpful refrences

• https://astrobiomike.github.io/metagenomics/metagen_anvio
• http://merenlab.org/2016/06/22/anvio-tutorial-v2/

Required input files

• Fastq files
• A co-assembled contigs fasta file (from sbx_coassembly)

Output

• Anvi'o interactive output