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Release v0.3.0: memory-bounded tokenization + DOD-O demo #4

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Merged
joncarter1 merged 2 commits into from
Jul 3, 2026
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Release v0.3.0: memory-bounded tokenization + DOD-O demo #4

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Release v0.3.0: memory-bounded tokenization + DOD-O demo notebook
joncarter1 Jul 3, 2026
4dbfe62
ci: exclude notebooks from ruff
joncarter1 Jul 3, 2026
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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -4,6 +4,8 @@ __pycache__/
.pytest_cache/
.ruff_cache/
dist/
# demo.ipynb: downloaded DOD-O records + cached embeddings (large; regenerated on run)
data/
# Seeded checkpoints / manifests (large binaries; fetched or seeded, not committed)
checkpoints/
*.ckpt
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4 changes: 4 additions & 0 deletions README.md
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Expand Up @@ -34,6 +34,10 @@ uv sync # or: pip install -e .

## Usage

> **Worked example:** [`demo.ipynb`](demo.ipynb) runs the full pipeline end-to-end — download the
> [Dreem Open Dataset (DOD-O)](https://arxiv.org/abs/1911.03221), generate Hypnos embeddings, and
> train a linear-probe sleep stager evaluated with subject-wise cross-validation.

Load an EDF, preprocess, and generate embeddings from the pre-trained Hypnos model:

```python
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