Conversation
Added "mcc" to the `acceptable_metrics` dictionary in the EnsembleAssociationNetwork class. Added the `pairwise_mcc` function to the fit function of the `EnsembleAssociationNetwork` class. Still need to confirm whether it returns True when it is passed to the hasattr function in line 1662 (in the main branch).
Moved `pairwise_mcc` underneath the `pairwise_biweight_midcorrelation` function. Added `pairwise_mcc` to the list of functions in the __init__ file.
Pairwise mcc update
2023.7.20 - Added `pairwise_mcc` with Mathew's Correlation Coefficient for binary correlations. Functionality also available in `EnsembleAssociationNetwork` ([@411an13](https://github.com/411an13))
* 2023.9.25 - Added `AggregateNetwork` class, `evenness/entropy` calculations, and `.mad` for median absolute devation to `Symmetry`.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
ClusteredNetworkfor wrapper aroundcommunity_detectionandedge_cluster_cooccurrence(formerly known ascluster_homogeneity).densetoredundantto be more consistent withscikit-bio. Addedconfidence_intervalto ensemble networks. Changed default metrics tonp.medianandstats.median_abs_deviation. Changed defaultsampling_sizefrom0.618...to1.0andwith_replacement=Falsetowith_replacement=True.