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v2023.8.15 - #7

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jolespin wants to merge 11 commits into
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v2023.8.15#7
jolespin wants to merge 11 commits into
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  • 2023.8.15 - Added ClusteredNetwork for wrapper around community_detection and edge_cluster_cooccurrence (formerly known as cluster_homogeneity).
  • 2023.8.14 - Changed dense to redundant to be more consistent with scikit-bio. Added confidence_interval to ensemble networks. Changed default metrics to np.median and stats.median_abs_deviation. Changed default sampling_size from 0.618... to 1.0 and with_replacement=False to with_replacement=True.

411an13 and others added 11 commits July 20, 2023 11:46
Added "mcc" to the `acceptable_metrics` dictionary in the EnsembleAssociationNetwork class.
Added the `pairwise_mcc` function to the fit function of the `EnsembleAssociationNetwork` class.
Still need to confirm whether it returns True when it is passed to the hasattr function in line 1662 (in the main branch).
Moved `pairwise_mcc` underneath the `pairwise_biweight_midcorrelation` function. Added `pairwise_mcc` to the list of functions in the __init__ file.
2023.7.20 - Added `pairwise_mcc` with Mathew's Correlation Coefficient for binary correlations. Functionality also available in `EnsembleAssociationNetwork` ([@411an13](https://github.com/411an13))
* 2023.9.25 - Added `AggregateNetwork` class, `evenness/entropy` calculations, and `.mad` for median absolute devation to `Symmetry`.
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