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  1. BIOX7014_Thesis BIOX7014_Thesis Public

    Single-cell RNA-seq and TCR repertoire analysis workflows for paediatric immune ageing using Scanpy, scVI, Milo and Dandelion.

    Jupyter Notebook

  2. cancer-genomics-pipeline cancer-genomics-pipeline Public

    Reproducible tumour-normal cancer genomics workflows for NGS variant calling and structural variant analysis.

    Shell

  3. metagenomics-functional-analysis metagenomics-functional-analysis Public

    Metagenomics and microbiome functional profiling workflows using R, phyloseq and KEGG-based analyses.

    R