PMSR model implementation - #40

Draft

StefanFlaumberg wants to merge 9 commits into

iqtree:masterfrom

StefanFlaumberg:sitemodel

Commits on May 7, 2025

PMSR model implementation
StefanFlaumberg
committed
14b26dc
Fix ModelSet checkpointing
StefanFlaumberg
committed
952f77e
Fix restrictions for --mlrate
StefanFlaumberg
committed
4d23d07
Add site-specific rate normalization and fix a BNNI bug
StefanFlaumberg
committed
b4a86d7
Fix site-specific options and improve help
StefanFlaumberg
committed
3e13b78
Improve misc info output and compatibility checks
StefanFlaumberg
committed
8478ee5
Rewrite PhyloTree::computePatternRate and improve output
StefanFlaumberg
committed
734dac1

Commits on May 19, 2025

Update PMSR model implementation to v3.0.1
StefanFlaumberg
committed
aa48a65
Suppress the repetitive NNI log message
StefanFlaumberg
committed
6881cef