PMSR model implementation - #391

Draft

StefanFlaumberg wants to merge 7 commits into

iqtree:masterfrom

StefanFlaumberg:sitemodel

Commits on Jan 18, 2025

PMSR model implementation
StefanFlaumberg
committed
13b2f46

Commits on Feb 11, 2025

Fix ModelSet checkpointing
StefanFlaumberg
committed
0045e58

Commits on Mar 19, 2025

Fix restrictions for --mlrate
StefanFlaumberg
committed
cc78821

Commits on Mar 22, 2025

Add site-specific rate normalization and fix a BNNI bug
StefanFlaumberg
committed
58be2d1

Commits on May 7, 2025

Fix site-specific options and improve help
StefanFlaumberg
committed
393708c
Improve misc info output and compatibility checks
StefanFlaumberg
committed
c3c85da
Rewrite PhyloTree::computePatternRate and improve output
StefanFlaumberg
committed
202622d