Skip to content

Allow minimap2chain to parse AS:i: score#18

Open
tanghaibao wants to merge 1 commit into
informationsea:masterfrom
tanghaibao:minimap2chain_score
Open

Allow minimap2chain to parse AS:i: score#18
tanghaibao wants to merge 1 commit into
informationsea:masterfrom
tanghaibao:minimap2chain_score

Conversation

@tanghaibao

Copy link
Copy Markdown

Currently the chain file generated by minimap2chain contains a fixed score of 4900. It would be better to get the minimap2 alignment score (in tag AS) as the chain score.

This fix parses this tag, as well as a drive-by update of README of the minimap2chain command.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant