IMPORTANT! enchantR has moved to https://github.com/immcantation/enchantr
To update Git configuration settings use:
git config user.email "your-gh-user@email.com"
git config user.name "your-gh-user-name"
git remote set-url origin git@github.com:immcantation/enchantr.git
enchantR is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). Immcantation provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
enchantR:
- Provides additional quality control and reporting functions for other R packages in the Immcantation framework.
- Provides parametrized
.Rmdreports for standard analysis. - Is part of the magic behind nf-co.re/airrflow, a start-to-finish Nextflow pipeline to analyze AIRR-seq data.
If you need help or have any questions, please contact the Immcantation Group.
If you have discovered a bug or have a feature request, you can open an issue using the issue tracker.
To receive alerts about Immcantation releases, news, events, and tutorials, join the Immcantation News Google Group. Membership settings can be adjusted to change the frequency of email updates.