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chore: track environment template CI #35: Commit 9168c2c pushed by iliasmahboub
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docs: add community health policies CI #34: Commit d2bc87c pushed by iliasmahboub
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chore: remove roadmap from git tracking CI #33: Commit cd95329 pushed by iliasmahboub
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docs: mark completed roadmap items CI #32: Commit 028e87c pushed by iliasmahboub
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test: add unit tests for confidence scoring and QC modules CI #31: Commit a190189 pushed by iliasmahboub
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add roadmap to gitignore CI #30: Commit 3efb025 pushed by iliasmahboub
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add joss publication roadmap CI #29: Commit 6c3b2c6 pushed by iliasmahboub
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rewrite paper and readme for joss submission CI #28: Commit 88faa7e pushed by iliasmahboub
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add orcid to joss paper CI #27: Commit 6191abe pushed by iliasmahboub
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add joss paper and bibliography CI #26: Commit 274d918 pushed by iliasmahboub
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feat: 3D protein structure prediction via ESMFold CI #25: Commit fbca996 pushed by iliasmahboub
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docs: add screenshots, fix black formatting for CI CI #24: Commit 2505665 pushed by iliasmahboub
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docs: clean up README, add citation, simplify quick start CI #23: Commit ef6ccef pushed by iliasmahboub
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docs: restore badges and architecture diagram, remove em dashes CI #22: Commit 85761fd pushed by iliasmahboub
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docs: rewrite README CI #21: Commit f471fa5 pushed by iliasmahboub
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fix: BLAST 16S database support via Entrez query filter CI #20: Commit f41c548 pushed by iliasmahboub
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feat: redesign UI with refined design system CI #19: Commit d7ff67b pushed by iliasmahboub
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feat: add BLAST database selector to UI CI #18: Commit d928690 pushed by iliasmahboub
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feat: use 16S ribosomal RNA database and filter uncultured hits CI #17: Commit 0109795 pushed by iliasmahboub
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feat: show species names on phylogenetic tree instead of accession nu… CI #16: Commit 4815724 pushed by iliasmahboub
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docs: rewrite README with architecture diagram and badges CI #15: Commit 51aa2dc pushed by iliasmahboub
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feat: redesign UI with modern glass aesthetic CI #14: Commit aa16f53 pushed by iliasmahboub
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fix: use highest-identity hit as top match, hide inner node labels CI #13: Commit 0aa7e6a pushed by iliasmahboub
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fix: truncate reference sequences to avoid EBI 4MB input limit CI #12: Commit fd4bc4f pushed by iliasmahboub
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fix: alignment output format and polling reliability CI #11: Commit cde1ef0 pushed by iliasmahboub
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