Shiny-AnalyzAIRR is a Shiny web application developed for the AnalyzAIRR package, making it user-friendly for biologists with little or no background in bioinformatics.
Shiny-AnalyzAIRR can be download from the Github repository and run locally on any device. Alternatively, it was deployed on the Web and can be directly used at this link.
The latest release of AnalyzAIRR can be installed from Github using devtools:
# AnalyzAIRR installation
devtools::install_github("i3-unit/AnalyzAIRR")
Shiny-AnalyzAIRR should be cloned as follow:
# Clone the repository in commande line:
git clone https://github.com/i3-unit/Shiny-AnalyzAIRR.git
Shiny-AnalyzAIRR can be launched from the terminal:
# Go to the Shiny-AnalyzAIRR folder
cd Shiny-AnalyzAIRR
# Launch R and shiny
R -e 'shiny::runApp("./")'
Alternatively, it can be run through Rstudio:
# Open global.R and run
shiny::runApp("./")
The interface can be opened in a web browser using the displayed hyper link address.
Shiny-AnalyzAIRR proposes two different data loading processes.
1. Upload a RepSeqExperiment object
A RepSeqExperiment object generated using the AnalyzAIRR R package and saved in an rds format can be used.
2. Upload supported input formats
More details on how to prepare the input data can be found here