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Fixes deprecated DataFrame.sort() in pandas #10

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Fixes deprecated DataFrame.sort() in pandas #10

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2 changes: 1 addition & 1 deletion traitar/hmmer2filtered_best.py
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Expand Up @@ -47,7 +47,7 @@ def aggregate_domain_hits(filtered_df, out_f):
#sort by gene identifier and Pfam
with open(out_f, 'w') as out_fo:
ps.DataFrame(filtered_df.columns).T.to_csv(out_f, sep = "\t", index = False, header = False, mode = 'a')
filtered_df.sort(columns = ["target name", "query name"], inplace = True)
filtered_df.sort_values(by = ["target name", "query name"], inplace = True)
if filtered_df.shape[0] > 0:
current_max = filtered_df.iloc[0,]
else:
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