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Proteogenomicsdb - pull request 2#2

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AlistairRice01 wants to merge 20 commits into
hyweldd:masterfrom
AlistairRice01:master
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Proteogenomicsdb - pull request 2#2
AlistairRice01 wants to merge 20 commits into
hyweldd:masterfrom
AlistairRice01:master

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@AlistairRice01

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Things to know:

  • there was a typo in all the file paths involved in the gencode_workflow I think I fixed them but there is a chance that some of the file paths may be wrong
  • The test files need to be updated to match the new version of proteogenomicsdb
  • Documentation still needs to be done
  • When you run GENCODEDB it generates a VCF file larger than 1 terabyte
  • I updated ENSEMBLDB. It should run correctly but has not been tested yet

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