Update networkx to 3.1

[pyup-bot]

This PR updates networkx from 3.0 to 3.1.

Changelog

3.1rc0

What's Changed
* Fix link in isomorphvf2.py by paulitapb in https://github.com/networkx/networkx/pull/6347
* Update precommit hooks by jarrodmillman in https://github.com/networkx/networkx/pull/6348
* Add clique examples and deprecate helper funtions by rossbar in https://github.com/networkx/networkx/pull/6186
* Laplace centrality for issue 4973 by gaborberei in https://github.com/networkx/networkx/pull/5399
* doc:improve doc of possible values of nodes and expected behaviour by tinaoberoi in https://github.com/networkx/networkx/pull/6333
* add OrderedGraph removal as an API change in release_3.0.rst by dschult in https://github.com/networkx/networkx/pull/6354
* Update release_3.0 authors (add Jim and Erik) by eriknw in https://github.com/networkx/networkx/pull/6356
* Fix broken link nx guide by paulitapb in https://github.com/networkx/networkx/pull/6361
* Add nx-guide link in the tutorial by paulitapb in https://github.com/networkx/networkx/pull/6353
* DOC: Minor formatting fixups to get rid of doc build warnings. by rossbar in https://github.com/networkx/networkx/pull/6363
* Fix ecuation in clustering documentation by paulitapb in https://github.com/networkx/networkx/pull/6369
* Add reference to paper in vf2pp by paulitapb in https://github.com/networkx/networkx/pull/6373
* provide tikz with degrees, not radians by dimpase in https://github.com/networkx/networkx/pull/6360
* Improve handling of create_using to allow Mixins of type Protocol by dschult in https://github.com/networkx/networkx/pull/6244
* Remove an instance of random.sample from a set (deprecated in Python 3.9) by eriknw in https://github.com/networkx/networkx/pull/6380
* DOC: Add banner for user survey annoucement by MridulS in https://github.com/networkx/networkx/pull/6375
* bump pre-commit hooks (and fix CI) by danieleades in https://github.com/networkx/networkx/pull/6396
* Add generate / write "network text" (formerly graph_str) by Erotemic in https://github.com/networkx/networkx/pull/5602
* Improve doc regular graphs by paulitapb in https://github.com/networkx/networkx/pull/6397
* Fix link vonoroi by paulitapb in https://github.com/networkx/networkx/pull/6398
* Document PageRank algo convergence condition  by Qudirah in https://github.com/networkx/networkx/pull/6212
* Fix pre-commit on Python 3.10 by rossbar in https://github.com/networkx/networkx/pull/6407
* DOC: list pred method for MultiDiGraphs by MridulS in https://github.com/networkx/networkx/pull/6409
* Delete warning in approximation documentation by paulitapb in https://github.com/networkx/networkx/pull/6221
* Comment out unused unlayered dict construction. by rossbar in https://github.com/networkx/networkx/pull/6411
* Update installation test instructions by EricPostMaster in https://github.com/networkx/networkx/pull/6303
* Added new tests in test_clique.py by paulitapb in https://github.com/networkx/networkx/pull/6142
* Added test in project. Coverage up to 100. by Mjh9122 in https://github.com/networkx/networkx/pull/6196
* Add dispatching to more shortest path algorithms by eriknw in https://github.com/networkx/networkx/pull/6415
* Add Plausible Analytics to our docs by MridulS in https://github.com/networkx/networkx/pull/6413
* Fix docstring heading title. by rossbar in https://github.com/networkx/networkx/pull/6424
* Added tests to test_directed.py. by Mjh9122 in https://github.com/networkx/networkx/pull/6208
* Gallery example for Maximum Independent Set by stanyas in https://github.com/networkx/networkx/pull/5563
* spectral bisection for graphs using fiedler vector by MridulS in https://github.com/networkx/networkx/pull/6404
* Update developer requirements by jarrodmillman in https://github.com/networkx/networkx/pull/6429
* Fix reference in line.py-inverse_line_graph by Blueclaus13 in https://github.com/networkx/networkx/pull/6434
* Add project desc for visualization and ISMAGs by dschult in https://github.com/networkx/networkx/pull/6432
* Lint using Ruff by danieleades in https://github.com/networkx/networkx/pull/6371
* add ruff commit to git-blame-ignore by MridulS in https://github.com/networkx/networkx/pull/6440
* NXEP 0 and NXEP 1 - change status to Accepted by MridulS in https://github.com/networkx/networkx/pull/5343
* Bump gh-pages deploy bot version. by rossbar in https://github.com/networkx/networkx/pull/6446
* Start using ruff for pyupgrade and isort by MridulS in https://github.com/networkx/networkx/pull/6441
* Add documentation building to contributor guide by rossbar in https://github.com/networkx/networkx/pull/6437
* Reset deploy-action param names for latest version. by rossbar in https://github.com/networkx/networkx/pull/6451
* Doc upgrade paley graph by paulitapb in https://github.com/networkx/networkx/pull/6399
* Added two tests for convert_numpy by Mjh9122 in https://github.com/networkx/networkx/pull/6455
* Clean up similarity.py and use dataclasses for storing state by MridulS in https://github.com/networkx/networkx/pull/5831
* Remove pdf latex builds of docs by MridulS in https://github.com/networkx/networkx/pull/5572
* Add docstring for dorogovtsev_goltsev_mendes generator by rossbar in https://github.com/networkx/networkx/pull/6450
* tweak _dispatch to allow G keyword. Add test. by dschult in https://github.com/networkx/networkx/pull/6471
* Fix negative edge cycle function raising exception for empty graph and added test function by PurviChaurasia in https://github.com/networkx/networkx/pull/6473
* Dispatch more BFS-based algorithms by eriknw in https://github.com/networkx/networkx/pull/6467
* Ignore weakrefs when testing for memory leak by eriknw in https://github.com/networkx/networkx/pull/6466
* Fix reference formatting in generator docstring. by rossbar in https://github.com/networkx/networkx/pull/6493
* tweak `test_override_dispatch` to allow G keyword by eriknw in https://github.com/networkx/networkx/pull/6499
* Improve test coverage for astar.py by navyagarwal in https://github.com/networkx/networkx/pull/6504
* Add docstring example to weighted.py by navyagarwal in https://github.com/networkx/networkx/pull/6497
* Fix len operation of UnionAtlas by dschult in https://github.com/networkx/networkx/pull/6478
* Improve test coverage for edgelist.py by navyagarwal in https://github.com/networkx/networkx/pull/6507
* Improve test coverage for mst.py and bug fix in prim_mst_edges() by navyagarwal in https://github.com/networkx/networkx/pull/6486
* Add examples clarifying ambiguity of nbunch by navyagarwal in https://github.com/networkx/networkx/pull/6513
* Updating removing explicit import for communities by Lukong123 in https://github.com/networkx/networkx/pull/6459
* Use generator to limit memory footprint of read_graph6. by rossbar in https://github.com/networkx/networkx/pull/6519
* Update docstring of paley graph  by paulitapb in https://github.com/networkx/networkx/pull/6529
* Fixed bug k_truss doesn't raise exception for self loops by PurviChaurasia in https://github.com/networkx/networkx/pull/6521
* Update pre-commit by jarrodmillman in https://github.com/networkx/networkx/pull/6545
* Update sphinx by jarrodmillman in https://github.com/networkx/networkx/pull/6544
* Add docstring examples to dag.py by navyagarwal in https://github.com/networkx/networkx/pull/6491
* Add example script for mst by PurviChaurasia in https://github.com/networkx/networkx/pull/6525
* Add docstring examples to boundary.py by navyagarwal in https://github.com/networkx/networkx/pull/6487
* improve test coverage for branchings.py by Qudirah in https://github.com/networkx/networkx/pull/6523
* Improve test coverage for redundancy.py by navyagarwal in https://github.com/networkx/networkx/pull/6551
* Fixed return type inconsistencies in shortest path methods documentation by navyagarwal in https://github.com/networkx/networkx/pull/6528
* Optimize _single_shortest_path_length function by Tortar in https://github.com/networkx/networkx/pull/6299
* Deprecate shortest_path functions to have consistent return values in v3.3 by dschult in https://github.com/networkx/networkx/pull/6567
* Add community detection example to Gallery by navyagarwal in https://github.com/networkx/networkx/pull/6526
* add simple cycle enumerator for undirected class by boothby in https://github.com/networkx/networkx/pull/6461
* Fix survey URL by Infiniticity in https://github.com/networkx/networkx/pull/6548
* Test dispatching via nx-loopback backend by jim22k in https://github.com/networkx/networkx/pull/6536
* Fixed return type inconsistencies in weighted.py by navyagarwal in https://github.com/networkx/networkx/pull/6568
* Update team galleries by jarrodmillman in https://github.com/networkx/networkx/pull/6569
* Added Docstring Example for Bidirectional Shortest Path by vanshika230 in https://github.com/networkx/networkx/pull/6570
* Update release requirements by jarrodmillman in https://github.com/networkx/networkx/pull/6587

New Contributors
* gaborberei made their first contribution in https://github.com/networkx/networkx/pull/5399
* stanyas made their first contribution in https://github.com/networkx/networkx/pull/5563
* Blueclaus13 made their first contribution in https://github.com/networkx/networkx/pull/6434
* PurviChaurasia made their first contribution in https://github.com/networkx/networkx/pull/6473
* navyagarwal made their first contribution in https://github.com/networkx/networkx/pull/6504
* Tortar made their first contribution in https://github.com/networkx/networkx/pull/6299
* jim22k made their first contribution in https://github.com/networkx/networkx/pull/6536
* vanshika230 made their first contribution in https://github.com/networkx/networkx/pull/6570

**Full Changelog**: https://github.com/networkx/networkx/compare/networkx-3.0...networkx-3.1rc0

Links

• PyPI: https://pypi.org/project/networkx
• Changelog: https://pyup.io/changelogs/networkx/
• Homepage: https://networkx.org/