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Remove cellbender_task.py COPY from Pegasus Dockerfile (file deleted) Build and Push Pegasus Docker Image #24: Commit c5d5dbb pushed by majid-farhadloo
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Inline cellbender CLI in WDL; remove cellbender_task.py (not in publi… Build and Push Pegasus Docker Image #23: Commit 5317fd5 pushed by majid-farhadloo
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Fix file delocalization: use glob() for File outputs in CellRanger/Ce… Build and Push Pegasus Docker Image #22: Commit d47ded4 pushed by majid-farhadloo
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Fix file delocalization: use glob() for File outputs in CellRanger/Ce… Build and Push CellRanger Docker Image #7: Commit d47ded4 pushed by majid-farhadloo
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Auto-detect FASTQ sample prefix from filenames as fallback Build and Push Pegasus Docker Image #21: Commit abbd53e pushed by majid-farhadloo
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Auto-detect FASTQ sample prefix from filenames as fallback Build and Push CellRanger Docker Image #6: Commit abbd53e pushed by majid-farhadloo
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Add fastq_sample_prefix to decouple --sample from --id in CellRanger;… Build and Push Pegasus Docker Image #20: Commit 5ef3480 pushed by majid-farhadloo
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Add fastq_sample_prefix to decouple --sample from --id in CellRanger;… Build and Push CellRanger Docker Image #5: Commit 5ef3480 pushed by majid-farhadloo
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Add --create-bam false for CellRanger 10.0 compatibility Build and Push CellRanger Docker Image #4: Commit 94a4df4 pushed by majid-farhadloo
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Add --create-bam false for CellRanger 10.0 compatibility Build and Push Pegasus Docker Image #19: Commit 94a4df4 pushed by majid-farhadloo
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Fix CellRanger 10.0 --include-introns flag: pass explicit true/false … Build and Push CellRanger Docker Image #3: Commit 3a85aac pushed by majid-farhadloo
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Fix CellRanger 10.0 --include-introns flag: pass explicit true/false … Build and Push Pegasus Docker Image #18: Commit 3a85aac pushed by majid-farhadloo
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Fix Harmony import: use harmony-pytorch instead of harmonypy; free da… Build and Push Pegasus Docker Image #17: Commit 709e6c9 pushed by majid-farhadloo
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Fix audit findings: .get_shape() deprecation, file handle leak, UMAP … Build and Push Pegasus Docker Image #16: Commit 50554e6 pushed by majid-farhadloo
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Add pip list diagnostic to Dockerfile build Build and Push Pegasus Docker Image #15: Commit 7eac53a pushed by majid-farhadloo
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Update pegasus_docker tag to sha-b2c697b Build and Push Pegasus Docker Image #14: Commit 8d764e4 pushed by majid-farhadloo
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Fix broken build verification: pkg_resources has no __version__ attr Build and Push Pegasus Docker Image #13: Commit e79d377 pushed by majid-farhadloo
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Debug pkg_resources: add diagnostics, disable build cache Build and Push Pegasus Docker Image #12: Commit 1c12cde pushed by majid-farhadloo
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Fix pkg_resources: use pip constraints to protect setuptools during r… Build and Push Pegasus Docker Image #11: Commit bef1d84 pushed by majid-farhadloo
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Update pegasus_docker tag to sha-fcd59b8 (hard-fix build) Build and Push Pegasus Docker Image #10: Commit 12eadd6 pushed by majid-farhadloo
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Fix NeMo h5 feature_type/genome 'NA' bug: patch before pegasusio reads Build and Push Pegasus Docker Image #9: Commit 92ef0d0 pushed by majid-farhadloo
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Force-reinstall setuptools after full pip resolution in Pegasus image Build and Push Pegasus Docker Image #8: Commit 313345a pushed by majid-farhadloo
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Fix missing pkg_resources by pinning setuptools in Pegasus image Build and Push Pegasus Docker Image #7: Commit b6cb242 pushed by majid-farhadloo
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Update CellRanger version from 8.0.1 to 10.0.0 Build and Push CellRanger Docker Image #2: Commit 41c241b pushed by majid-farhadloo
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Add CellRanger Docker image, fix cellranger_docker placeholder, and f… Build and Push Pegasus Docker Image #6: Commit 77f681f pushed by majid-farhadloo
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