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use prothint_augustus.gff as hints in Augustus

Status: Open.

#63 In gatech-genemark/ProtHint;

· MFSeidl opened on Mar 11, 2026

Hash-merge error after installing all dependencies

Status: Open.

#62 In gatech-genemark/ProtHint;

· desmodus1984 opened on Jul 17, 2025

The hints file(s) for GeneMark-EX contain less than 150 introns with multiplicity >= 4!

Status: Open.

#60 In gatech-genemark/ProtHint;

· yzliu01 opened on Jun 23, 2024

genemark_hintsfile.gff.rnaseq.tmp': No such file or directory, ERROR Failed to execute: mv

Status: Open.

#56 In gatech-genemark/ProtHint;

· scaliwalker opened on Aug 29, 2023

Freeze at 99,9%

Status: Open.

#55 In gatech-genemark/ProtHint;

· tberthelier opened on Jul 14, 2023

Error: file not found

Status: Open.

#53 In gatech-genemark/ProtHint;

· kdarragh1994 opened on Feb 2, 2023

petap.pl fails on one sample but not others, too few introns

Status: Open.

#50 In gatech-genemark/ProtHint;

· ToriEggers opened on Oct 31, 2022

alternative start codons

Status: Open.

#48 In gatech-genemark/ProtHint;

· cpaight opened on Sep 16, 2022

Error: ProtHint/ACAB/prothint_augustus.gff not found !

Status: Open.

#43 In gatech-genemark/ProtHint;

· CongLiu37 opened on Jul 1, 2022

Error in braker (Prothint step)

Status: Open.

#38 In gatech-genemark/ProtHint;

· minhasbushra opened on Jan 26, 2022

error, file not found parse_set.pl: set.out

Status: Open.

#35 In gatech-genemark/ProtHint;

· mictadlo opened on Oct 19, 2021

No stop codons in spaln.gff

Status: Open.

#13 In gatech-genemark/ProtHint;

· cdmmoeller opened on Aug 16, 2020