Skip to content

Both GUI and CLI tutorials as well as ipynb #36

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
rdsza merged 18 commits into from
May 27, 2026
Merged

Both GUI and CLI tutorials as well as ipynb #36

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
18 commits
Select commit Hold shift + click to select a range
5ac7943
first bit of tutorial update
sonyahanson Oct 30, 2025
45b1615
adding images for 1st tutorial push
sonyahanson Oct 30, 2025
fdb40ff
added beginnings of RyR tutorial
sonyahanson Nov 3, 2025
37beb0c
tutorial minor updates
sonyahanson Nov 3, 2025
08de37c
minor updates to tutorial
sonyahanson Nov 3, 2025
1ac384b
adding CLI anchor node definition to tutorial
sonyahanson Nov 3, 2025
e1fd597
small update to tutorial
sonyahanson Nov 3, 2025
5247a49
v small update to tutorial
sonyahanson Nov 3, 2025
e6a6374
added last bit of RyR tutorial
sonyahanson Nov 5, 2025
ad9e6b3
Adding the notebook for Ryr Demo dataset visualization, this can be u…
rdsza Mar 30, 2026
f88a315
Moved the notebook from the top folder to tutorial folder upon request.
rdsza Apr 9, 2026
fd17c31
Merge pull request #35 from rdsza/docs-updates
sonyahanson Apr 9, 2026
96e4494
small fixes to README in tutorial
sonyahanson Apr 21, 2026
4bd8dd2
updated and cleaned up tutorial - added ref to ipynb
sonyahanson Apr 21, 2026
e8e5f2e
added initial setup for visualization notebook with required package …
rdsza Apr 23, 2026
b4a1bb6
updated execution counts in Visualization Notebook and removed unnece…
rdsza May 20, 2026
f815ed5
extract notebook viewers into visualization.py with INTERACTIVE toggle
rdsza May 21, 2026
d632e46
add last bit of GUI tutorial
sonyahanson May 27, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1,180 changes: 261 additions & 919 deletions tutorial/README.md
View file
Open in desktop

Large diffs are not rendered by default.

343 changes: 343 additions & 0 deletions tutorial/RyR1GCs_demo/Visualization_Notebook.ipynb
View file
Open in desktop

Large diffs are not rendered by default.

749 changes: 749 additions & 0 deletions tutorial/RyR1GCs_demo/visualization.py
View file
Open in desktop

Large diffs are not rendered by default.

Binary file added tutorial/images/GUI-Compile.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-ManifoldEM.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-NLSAmovie.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-bestPD.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-distribution.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-initialization.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-landscape.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/GUI-thresholding.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/psi_1.gif
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added tutorial/images/schematic.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
929 changes: 929 additions & 0 deletions tutorial/old-manual-readme-form.md
View file
Open in desktop

Large diffs are not rendered by default.

Loading