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Patch python2->3 - #2

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bkmarzouk wants to merge 57 commits into
essex-lab:masterfrom
instituteofcancerresearch:patch
Open

Patch python2->3#2
bkmarzouk wants to merge 57 commits into
essex-lab:masterfrom
instituteofcancerresearch:patch

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@bkmarzouk

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Contains a number of patches to run ProtoMS with Python3, as well as several other misc updates

  • Syntax corrections (e.g. print ... -> print(...), xrange(...) -> range(...))
  • Reformat for Python style consistency: black, isort
  • Resolve circular import error (triggered formerly by from protomslib import gcmc). Moved gcmc.py -> prepare/gcmc.py`)
  • Resolve make install error #1 for GNU compilers via updating CMakeLists.txt
  • Minor updates on dependency versioning and setup.py

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make install error

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