0.1.0a2

A few critical bug fixes:

• 0 >> r would be interpreted as Reaction(Species('r'), Species('nothing'), instead of the correct Reaction(Species('nothing'), Species('r'). That is, the 0 was always a product when used in a reaction.
• r + r >> b would be interpreted as r >> b, since species are keys in a dict.

0.1.0a1

Installation Simplification

The StochPy fix necessary to run the stochastic simulation portion of the package now runs automatically when importing crn.

Bug Fixes

Importing stochpy without installing it would quit and not show any error. Now a normal ImportError is raised and shown as expected.

0.1.0a0

Features

• Clean & concise reaction literal syntax
• Deterministic & Stochastic simulations
  • Deterministic simulations use initial concentrations
  • Stochastic simulations are supported thanks to StochPy, but we only make use of their Direct Solver (aka Gillespie's Method).
• Quick plotting of all species throughout the simulation
• Easy access to each species' time-series
• Function validation using deterministic simulation
  • Given a CRN and a function, we can check if the CRN actually computes the provided function (with an arbitrarily small chance of error)

Future Plans

• More fine-tuned/advanced plots
  • Specify which species are relevant
  • Contour plots
• Add a test suite
• Account for different volumes in stochastic simulations
• Add a simple logic gate submodule for quick composition of analog/discrete logic gates.
• Likely other things I'm forgetting