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dmighty007/README.md

Dibyendu Maity

Senior Research Fellow

Computational Chemistry Β· Molecular Dynamics Β· Enhanced Sampling Β· Scientific ML

Building data-driven tools for molecular simulation, rare-event pathways, phase identification, and free energy prediction.

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Portfolio Β Β·Β  Google Scholar Β Β·Β  ORCID Β Β·Β  Repositories


About

I am a Senior Research Fellow at S.N. Bose National Centre for Basic Sciences, Kolkata, working in the Department of Chemical and Biological Sciences under the supervision of Dr. Suman Chakrabarty. My research sits at the interface of molecular simulation, enhanced sampling, free energy calculations, and machine learning.

I like building tools that make simulation data easier to reason about: phase classification from trajectories, rare-event pathway generation, solvation free energy prediction, and practical full-stack interfaces around scientific models.

Research Focus

  • Molecular dynamics and enhanced sampling
  • Free energy calculations for chemical processes
  • Water structure, nucleation, hydrates, and ice phases
  • Scientific machine learning for simulation workflows

Current Snapshot

  • SRF and Ph.D. research scholar at S.N.B.N.C.B.S.
  • M.Sc. in Physics from S.N.B.N.C.B.S.
  • B.Sc. in Physics from Midnapore College (Autonomous)
  • Linux user, coder, and full-stack ML application enthusiast

Selected Research

PathGennie

Direction-guided adaptive sampling for rapid generation of rare-event pathways using ultrashort monitored trajectories.

Journal of Chemical Theory and Computation, 2025

IceCoder

Variational autoencoder framework for identifying ice phases directly from molecular simulation trajectories.

Journal of Chemical Theory and Computation, 2025

Solvation Free Energy Prediction

Comparative study of molecular representations and ML methods for transferable solvation free energy prediction.

Research Square, 2025

Luminescent Nanotubes

Computational study of efficient light harvesting in self-assembled organic luminescent nanotubes.

Chemical Science, 2023

Publications: 6 Β· Citations: 24 Β· h-index: 3
See the full publication list on Google Scholar or my portfolio.


Tech Stack

Simulation and scientific computing

GROMACS OpenMM PLUMED MDAnalysis HPC

Languages

Python C++ Fortran Bash JavaScript

ML, data, and visualization

PyTorch TensorFlow scikit-learn NumPy Pandas Plotly

Web and tools

Django Flask React PostgreSQL Git Linux


GitHub Analytics

Dibyendu's GitHub stats Top languages by repository
GitHub profile summary

Connect

I am open to collaborations around molecular simulation, enhanced sampling, scientific ML, and research software.

Email Portfolio Google Scholar ORCID

Pinned Loading

  1. MLDD MLDD Public

    Resources for the course on Machine Learning for Chemistry and Drug Design...

    Jupyter Notebook 1

  2. GROFRAME GROFRAME Public

    Jupyter Notebook

  3. SolOrder SolOrder Public

    Jupyter Notebook 2

  4. archcraft-dotfiles archcraft-dotfiles Public

    Archcraft dotfiles

    Shell

  5. Hyprland Hyprland Public

    Hyprland configs

    Shell

  6. WallPapers WallPapers Public

    A curated collection of wallpapers

    HTML 4 3