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VCF comparison remaining tasks

Status: Open.

#15 In dashnowlab/TR-Benchmarking;

· GARRISON-2 opened on Jan 31, 2026

Analyse variant call accuracy based on the deviation from reference in the assembly

Status: Open.

#11 In dashnowlab/TR-Benchmarking;

· avvaruakshay opened on Jan 22, 2026

Analyse the variant call accuracy at different length repeats

Status: Open.

#10 In dashnowlab/TR-Benchmarking;

· avvaruakshay opened on Jan 22, 2026

BamQC of the GIAB samples

Status: Open.

#9 In dashnowlab/TR-Benchmarking;

· avvaruakshay opened on Jan 22, 2026

Make a README for assembly concordance analysis

Status: Open.

#7 In dashnowlab/TR-Benchmarking;

· avvaruakshay opened on Nov 21, 2025

Make a google doc for the paper draft

Status: Open.

#6 In dashnowlab/TR-Benchmarking;

· hdashnow opened on Nov 19, 2025

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Submit TR benchmark paper

Develop nextflow script for 7 tools

Status: Open.

#4 In dashnowlab/TR-Benchmarking;

· elbayaliyev opened on Nov 19, 2025

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Nextflow script to run 7 tools

Medaka container issues

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#3 In dashnowlab/TR-Benchmarking;

· elbayaliyev opened on Nov 19, 2025

·  

Nextflow script to run 7 tools