Tutorials
This page is here for legacy information. For more recent info on accessing Cytoscape through R, Python, or node.js, please refer to the Cytoscape Automation Repository.
Window Users: Some of the examples may not work on Windows. In that case, please use our Docker container.
(More coming soon...)
We had several workshops using cyREST and other tools. The following is the link to both lecture slides and course materials (sample code):
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VIZBI 2015 Tutorial: Cytoscape, IPython, Docker and Reproducible Data Visualization Workflow - 3/24/2015
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SDCSB Cytoscape Advanced Tutorial - 4/17/2015
Since you need to install a lot of applications and libraries to run typical data visualization workflows, we used Docker to build portable data analysis environment. If you are not familiar with Docker, please read the following document: