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Releases: cschlaffner/PoGo

E.coli

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@cschlaffner cschlaffner released this 16 Jan 19:06

Minor update for user convenience:

  • Fasta gene and transcript ID extraction now only dependent on keywords 'gene' and 'transcript' followed by any character.

C.elegans

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@cschlaffner cschlaffner released this 16 Sep 16:28

This release combines the latest updates to the source code.
PoGo is now capable running with Ensembl and Gencode data alike. Additionally, custom annotation files do not require CDS entries in the GTF file to be ordered in translation direction anymore. CDS entries can not also be used correctly when sorted based on ascending coordinate order.

Fruitfly

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@cschlaffner cschlaffner released this 16 Aug 19:36

Latest release with additional option -idv to enable/disable (1/0) the inclusion of identifier versions (e.g. ENST00000606589.1 vs. ENST00000606589)

Zebrafish

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@cschlaffner cschlaffner released this 21 Nov 14:53

Species selection made obsolete supporting now all species in Ensembl.

Mouse

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@cschlaffner cschlaffner released this 15 Oct 18:59

This release supports Zebrafish (Danio rerio) and Yeast (Saccharomyces cerevisiae) as additional species.

Human

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@cschlaffner cschlaffner released this 29 Nov 21:38

This is the first release uploaded on github. This release included support for 25 species (Ensembl identifiers) and executables for Windows, Linux and MacOS.