Prediction of peptide properties

This curated list collects machine learning models dedicated to predicting specific properties of peptides.

• Antibacterial peptides (ABP)
• Anticancer peptides (ACP)
• Antifungal peptides (AFP)
• Antiinflammatory peptides (AIP)
• Antimicrobial peptides (AMP)
• Antiparasitic peptides (APP)
• Antiviral peptides (AVP)
• Anti-multiclass peptides
• Blood-Brain Barrier Peptides (BBP)
• Cell-penetrating peptides (CPP)
• Neuropeptides (NP)
• Toxic peptides (TP)

Antibacterial peptides (ABP)

1. Deep-ABPpred (2021): publication; web server.
2. StaBle-ABPpred (2021): publication; web server.

Anticancer peptides (ACP)

1. ACP-DA (2021): publication; repository.
2. ACP-DL (2019): publication; repository.
3. ACP-MHCNN (2020): pre-print; repository.
4. ACPP (2015): publication; web server.
5. ACPred (2019): publication; web server.
6. ACPred-FL (2018): publication; web server.
7. ACPred-Fuse (2020): publication; web server.
8. AMP0 (2019): publication; web server.
9. AntiCP (2013): publication; web server.
10. AntiCP 2.0 (2020): publication; web server.
11. cACP-2LFS (2020): publication; repository.
12. CancerGram (2020): publication; web server; repository.
13. DeepACP (2020): publication; repository.
14. DLACP (2020): pubToxinPredlication.
15. DLFF-ACP (2021): publication; repository.
16. DRACP (2020): publication; repository.
17. Hajisharifi et al. (2013): publication.
18. iACP (2016): publication; web server.
19. iACP-DRLF (2021): publication; repository.
20. iACP-FSCM (2021): publication; web server; repository.
21. iACP-GAEnsC (2017): publication.
22. Khan et al. (2017): publication.
23. Li & Wang (2016): publication.
24. Li et al. (2020): publication.
25. mACPpred (2019): publication; web server.
26. ME-ACP (2021): pre-print.
27. MLACP (2017): publication; web server.
28. SAP (2018): publication.
29. StackACPred (2022): publication; repository.
30. TargetACP (2018): publication

Antifungal peptides (AFP)

1. Antifp (2018): publication; web server.
2. Deep-AFPpred (2021): publication; web server.
3. Deep-AntiFP (2021): publication; repository.
4. iAFPs-EnC-GA (2022): publication; repository.
5. Mousavizadegan & Mohabatkar (2018): publication.

Antiinflammatory peptides (AIP)

1. AIEpred (2020): publication; repository.
2. AntiInflam (2017): publication; web server.
3. AntiFlamPred (2021): publication.
4. AIPpred (2018): publication; web server.
5. PreAIP (2019): publication; web server.

Antimicrobial peptides (AMP)

1. ACEP (2020): publication; repository.
2. ADAM (2015): publication; web server.
3. AI4AMP (2021): publication; repository, web server.
4. AMAP (2019): publication; web server.
5. AMP0 (2020): publication; web server.
6. AMPA (2012): publication; web server.
7. AMPDiscover (2021): publication; web server.
8. AmPEP (2018): publication; repository; web server.
9. amPEPpy 1.0 (2020): publication; repository.
10. AMP-GAN (2020): publication.
11. AMPGAN v2 (2021): pre-print.
12. AmpGram (2020): publication; repository: training of the model; repository: R package; web server.
13. Ampir (2020): publication; repository: training of the models; repository: R package; web server.
14. AMPlify (2020): publication; repository.
15. AMPpred-EL (2022): publication.
16. AMPScanner V2 (2018): publication.
17. ANFIS (2012): publication.
18. AniAMPpred (2021): publication; web server.
19. APIN (2019): publication; repository.
20. Bacteriocin classifier v2.0 (2019): thesis; repository.
21. Co-AMPpred (2021): publication; repository.
22. CAMP (2010): publication.
23. CAMPR3 (2016): publication; web server.
24. ClassAMP (2012): publication; web server.
25. CS-AMPPred (2012): publication; standalone software.
26. DBAASP (2014): publication; web server.
27. dbAMP (2019): publication; web server.
28. Deep-AmPEP30 (2020): publication; repository; web server.
29. Ensemble-AMPPred (2021): publication; standalone software.
30. Ferrell et al. (2021): pre-print.
31. Healy et al. (2021): publication; repository.
32. iAMP-2L (2013): publication; web server.
33. iAMP-CA2L (2021): publication; repository; web server.
34. IAMPE (2020): publication; web server.
35. Maccari et al. (2013): publication.
36. Macrel (2020): publication; repository; web server.
37. MAMPs-Pred (2019): publication.
38. MLAMP (2016): publication; web server.
39. Ng et al. (2015): publication.
40. PepVAE3 (2021): pre-print.
41. sAMP-PFPDeep (2022): publication; repository.
42. Wang et al. (2011): publication.
43. Wani et al. (2021): publication; repository.
44. Witten & Witten (2019): publication; repository.
45. Zhang et al. (2021): publication; repository.

Antiparasitic peptides (APP)

1. i2APP (2022): publication; repository.
2. PredAPP (2021): publication; repository; web server.

Antiviral peptides (AVP)

1. AntiVPP 1.0 (2019): publication; repository.
2. AVP‐IC50Pred (2015): publication; web server.
3. AVPIden (2021): publication ;web server.
4. AVPpred (2012): publication; web server.
5. Bakare et al. (2021): publication.
6. DeepAVP (2020): publication; web server.
7. ENNAVIA (2021): pre-print; web server.
8. FIRM-AVP (2020): publication; web server; repository.
9. Meta-iAVP (2019): publication; web server.
10. Nath (2021): publication.
11. PandoraGAN (2021): publication; repository; web server.

Anti-multiclass peptides

1. ACHP (2021): anticancer and antihypertensive peptides: publication; web server.
2. AMPDiscover (2021): antimicrobial, antibacterial, antifungal, antiparasitic, and antiviral: publication; web server.
3. iAMPpred (2017): antibacterial, antiviral, antifungal: publication; web server.
4. iAMP-CA2L (2021): antibacterial, antiviral peptides, antifungal, antibiofilm, antiparasital, anti-HIV, anticancer, chemotactic, anti-MRSA, antiendotoxin publication; repository; web server.
5. MLBP (2022): anticancer, antidiabetic, antihypertensive, antiinflammatory and antimicrobial: publication; web server; repository.
6. Pep-CNN (2022): anti-angiogenic, antibacterial, anticancer, antiinflammatory, antiviral, cell-penetrating, quorum sensing, and surface-binding peptides: publication; repository.
7. PEPred-Suite (2019): antiangiogenic, antibacterial, antiinflammatory, antiviral, antifungal, cell-penetrating, quorum sensing, surface-binding peptides: publication; web server.

Blood-Brain Barrier Peptides (BBP)

1. B3Pred (2021): publication; web server.
2. BBPpred (2021): publication; web server.
3. Zou (2021): publication; code.

Cell-penetrating peptides (CPP)

1. BChemRF-CPPred (2021): publication, web server.
2. CellPPDMod (2018): publication, web server.
3. CPPFormer (2022): publication; []
4. CPPred-RF (2017): publication; web server.
5. KELM-CPPpred (2018): publication; web server.
6. MLCPP (2017): publication; web server.
7. MLCPP 2.0 (2022): publication; web server.
8. SkipCPP-Pred (2017): publication; web server.
9. TargetCPP (2020): publication; code.
10. Yadahalli et al. (2021): pre-print.

Neuropeptides (NP)

1. NeuroCS (2020): publication; web server.
2. NeuroPIpred (2019): publication; web server.
3. NeuroPP (2019): publication; web server.
4. NeuroPpred-Fuse (2021): publication; repository.
5. NeuroPred-FRL (2021): publication; web server.
6. PredNeuroP (2020): publication; repository.

Toxic peptides (TP)

1. ToxIBTL (2022): publication; web server; repository.
2. ToxinPred (2015): publication; web server.