chunk 4/5: file-size budget splits + edge-list transaction + logger ownership#5
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Chunk 4/5 (original chunk 12). Splits over-budget modules into barrels (parser ts/python extractors, mcp server state/lifecycle, application document-file / refresh-graph / viewer-data, http-server index/arch-watcher, cli arg-routing, webview ui helpers), plus edge-list load/mutate/save transaction semantics and explicit logger type-vs-implementation ownership.
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